[PM-22558] Update IOrganizationUserRepository.ReplaceAsync to preserve existing access to collections of the type DefaultUserCollection (#6037)

* feat: exclude DefaultUserCollection from GetManyByOrganizationIdWithPermissionsAsync

Updated EF implementation, SQL procedure, and unit test to verify that default user collections are filtered from results

* Update the public CollectionsController.Get method to return a NotFoundResult for collections of type DefaultUserCollection.

* Add unit tests for the public CollectionsController

* Update ICollectionRepository.GetManyByOrganizationIdAsync to exclude results of the type DefaultUserCollection

Modified the SQL stored procedure and the EF query to reflect this change and added a new integration test to ensure the functionality works as expected.

* Refactor CollectionsController to remove unused IApplicationCacheService dependency

* Update IOrganizationUserRepository.GetDetailsByIdWithCollectionsAsync to exclude DefaultUserCollections

* Update IOrganizationUserRepository.GetManyDetailsByOrganizationAsync to exclude DefaultUserCollections

* Undo change to GetByIdWithCollectionsAsync

* Update integration test to verify exclusion of DefaultUserCollection in OrganizationUserRepository.GetDetailsByIdWithCollectionsAsync

* Clarify documentation in ICollectionRepository to specify that GetManyByOrganizationIdWithAccessAsync returns only shared collections belonging to the organization.

* Update IOrganizationUserRepository.ReplaceAsync to preserve existing access to collections of the type DefaultUserCollection

util/Migrator/DbScripts/2025-07-04_00_PreserveDefaultCollectionsAccessOnUpdate.sql

@@ -0,0 +1,89 @@
+CREATE OR ALTER PROCEDURE [dbo].[OrganizationUser_UpdateWithCollections]
+    @Id UNIQUEIDENTIFIER,
+    @OrganizationId UNIQUEIDENTIFIER,
+    @UserId UNIQUEIDENTIFIER,
+    @Email NVARCHAR(256),
+    @Key VARCHAR(MAX),
+    @Status SMALLINT,
+    @Type TINYINT,
+    @ExternalId NVARCHAR(300),
+    @CreationDate DATETIME2(7),
+    @RevisionDate DATETIME2(7),
+    @Permissions NVARCHAR(MAX),
+    @ResetPasswordKey VARCHAR(MAX),
+    @Collections AS [dbo].[CollectionAccessSelectionType] READONLY,
+    @AccessSecretsManager BIT = 0
+AS
+BEGIN
+    SET NOCOUNT ON
+
+    EXEC [dbo].[OrganizationUser_Update] @Id, @OrganizationId, @UserId, @Email, @Key, @Status, @Type, @ExternalId, @CreationDate, @RevisionDate, @Permissions, @ResetPasswordKey, @AccessSecretsManager
+    -- Update
+    UPDATE
+        [Target]
+    SET
+        [Target].[ReadOnly] = [Source].[ReadOnly],
+        [Target].[HidePasswords] = [Source].[HidePasswords],
+        [Target].[Manage] = [Source].[Manage]
+    FROM
+        [dbo].[CollectionUser] AS [Target]
+    INNER JOIN
+        @Collections AS [Source] ON [Source].[Id] = [Target].[CollectionId]
+    WHERE
+        [Target].[OrganizationUserId] = @Id
+        AND (
+            [Target].[ReadOnly] != [Source].[ReadOnly]
+            OR [Target].[HidePasswords] != [Source].[HidePasswords]
+            OR [Target].[Manage] != [Source].[Manage]
+        )
+
+    -- Insert
+    INSERT INTO [dbo].[CollectionUser]
+    (
+        [CollectionId],
+        [OrganizationUserId],
+        [ReadOnly],
+        [HidePasswords],
+        [Manage]
+    )
+    SELECT
+        [Source].[Id],
+        @Id,
+        [Source].[ReadOnly],
+        [Source].[HidePasswords],
+        [Source].[Manage]
+    FROM
+        @Collections AS [Source]
+    INNER JOIN
+        [dbo].[Collection] C ON C.[Id] = [Source].[Id] AND C.[OrganizationId] = @OrganizationId
+    WHERE
+        NOT EXISTS (
+            SELECT
+                1
+            FROM
+                [dbo].[CollectionUser]
+            WHERE
+                [CollectionId] = [Source].[Id]
+                AND [OrganizationUserId] = @Id
+        )
+
+    -- Delete
+    DELETE
+        CU
+    FROM
+        [dbo].[CollectionUser] CU
+    INNER JOIN
+        [dbo].[Collection] C ON C.[Id] = CU.[CollectionId]
+    WHERE
+        CU.[OrganizationUserId] = @Id
+        AND C.[Type] != 1  -- Don't delete default collections
+        AND NOT EXISTS (
+            SELECT
+                1
+            FROM
+                @Collections
+            WHERE
+                [Id] = CU.[CollectionId]
+        )
+END
+GO